源码阅读网40天挑战spring核心源码
-o post_recal_data_sample1.table
#generate before/after plots
java -jar $GATK \
-T AnalyzeCovariates \
-R $DB/hg19.fa \
-L chr22 \
-before recal_data_sample1.table \
-after post_recal_data_sample1.table \
-plots recalibration_sample1_plots.pdf
#Apply the recalibration to your sequence data
java -jar $GATK \
-T PrintReads \
